| addCohort() | Species< Model > | virtual |
| addCohort(Cohort< Model > bc) | Species< Model > | |
| Species_Base::addCohort(T bc) | Species_Base | |
| bfin_is_u0in | Species_Base | |
| birth_flux_in | Species_Base | |
| birth_flux_out_history | Species_Base | protected |
| birthRate(int i, double x, double t, void *env) | Species< Model > | virtual |
| boundaryCohort | Species< Model > | protected |
| calc_boundary_u(double gb, double pe) | Species< Model > | virtual |
| cohorts | Species< Model > | protected |
| copyCohortsExtraToState(std::vector< double >::iterator &it) | Species< Model > | virtual |
| copyExtraStateToCohorts(std::vector< double >::iterator &it) | Species< Model > | virtual |
| establishmentProbability(double t, void *env) | Species< Model > | virtual |
| get_boundary_u() | Species< Model > | virtual |
| get_maxSize() | Species< Model > | virtual |
| getCohort(int i) | Species< Model > | |
| getExtraRates(std::vector< double >::iterator &it) | Species< Model > | virtual |
| getU(int i) | Species< Model > | virtual |
| getX(int i) | Species< Model > | virtual |
| growthRate(int i, double x, double t, void *env) | Species< Model > | virtual |
| growthRateGradient(int i, double x, double t, void *env, double grad_dx) | Species< Model > | virtual |
| growthRateGradientCentered(int i, double xplus, double xminus, double t, void *env) | Species< Model > | virtual |
| growthRateOffset(int i, double x, double t, void *env) | Species< Model > | virtual |
| h | Species_Base | protected |
| init_density(int i, double x, void *env) | Species< Model > | virtual |
| initAndCopyExtraState(double t, void *env, std::vector< double >::iterator &it) | Species< Model > | virtual |
| initBoundaryCohort(double t, void *env) | Species< Model > | virtual |
| is_resident | Species_Base | |
| J | Species_Base | protected |
| mortalityRate(int i, double x, double t, void *env) | Species< Model > | virtual |
| mortalityRateGradient(int i, double x, double t, void *env, double grad_dx) | Species< Model > | virtual |
| n_extra_statevars | Species_Base | protected |
| print() | Species< Model > | virtual |
| removeDeadCohorts(double ucut) | Species< Model > | virtual |
| removeDenseCohorts(double dxcut) | Species< Model > | virtual |
| removeDensestCohort() | Species< Model > | virtual |
| resize(int _J) | Species< Model > | virtual |
| savedCohort | Species< Model > | protected |
| schedule | Species_Base | protected |
| set_bfin_is_u0in(bool flag) | Species_Base | |
| set_birthTime(int i, double t0) | Species< Model > | virtual |
| set_inputBirthFlux(double b) | Species_Base | |
| set_ub(double _ub) | Species< Model > | virtual |
| set_xb(double _xb) | Species< Model > | virtual |
| setU(int i, double _u) | Species< Model > | virtual |
| setX(int i, double _x) | Species< Model > | virtual |
| size() | Species_Base | |
| Species(std::vector< double > breaks=std::vector< double >()) | Species< Model > | |
| Species(Model M) | Species< Model > | |
| triggerPreCompute() | Species< Model > | virtual |
| X | Species_Base | protected |
| x | Species_Base | protected |
| xb | Species_Base | |
| xsize() | Species_Base | |
| ~Species_Base()=0 | Species_Base | pure virtual |
1.8.13